ENSGMOP00000017725 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGMOP00000017725

annotation not available (519 aa)

Predicted Functional Partners:

ENSGMOP00000015840

0.897

ENSGMOP00000005122

0.845

ENSGMOP00000010501

0.845

ENSGMOP00000009101

0.695

ENSGMOP00000019797

0.641

ENSGMOP00000016531

0.597

ENSGMOP00000011471

0.595

ENSGMOP00000013569

0.580

ENSGMOP00000002788

0.571

ENSGMOP00000005317

0.571

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSGMOP00000002788	ENSGMOP00000005122	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4.	annotation not available	0.571
ENSGMOP00000002788	ENSGMOP00000010501	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4.	Xylosyltransferase II.	0.571
ENSGMOP00000002788	ENSGMOP00000017725	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4.	annotation not available	0.571
ENSGMOP00000005122	ENSGMOP00000002788	annotation not available	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4.	0.571
ENSGMOP00000005122	ENSGMOP00000005317	annotation not available	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	0.571
ENSGMOP00000005122	ENSGMOP00000009101	annotation not available	Syndecan 2.	0.695
ENSGMOP00000005122	ENSGMOP00000010501	annotation not available	Xylosyltransferase II.	0.845
ENSGMOP00000005122	ENSGMOP00000011471	annotation not available	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.	0.595
ENSGMOP00000005122	ENSGMOP00000013569	annotation not available	Decorin.	0.580
ENSGMOP00000005122	ENSGMOP00000015840	annotation not available	Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I).	0.897
ENSGMOP00000005122	ENSGMOP00000016531	annotation not available	Negative elongation factor complex member A.	0.597
ENSGMOP00000005122	ENSGMOP00000017725	annotation not available	annotation not available	0.845
ENSGMOP00000005122	ENSGMOP00000019797	annotation not available	annotation not available	0.641
ENSGMOP00000005317	ENSGMOP00000005122	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	annotation not available	0.571
ENSGMOP00000005317	ENSGMOP00000010501	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	Xylosyltransferase II.	0.571
ENSGMOP00000005317	ENSGMOP00000017725	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	annotation not available	0.571
ENSGMOP00000009101	ENSGMOP00000005122	Syndecan 2.	annotation not available	0.695
ENSGMOP00000009101	ENSGMOP00000010501	Syndecan 2.	Xylosyltransferase II.	0.695
ENSGMOP00000009101	ENSGMOP00000013569	Syndecan 2.	Decorin.	0.465
ENSGMOP00000009101	ENSGMOP00000015840	Syndecan 2.	Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I).	0.628