STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000017869LSM1, U6 small nuclear RNA associated. (136 aa)    
Predicted Functional Partners:
ENSGMOP00000008272
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
ENSGMOP00000014243
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
ENSGMOP00000019615
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
ENSGMOP00000020660
Smx5.
   
 0.999
ENSGMOP00000006840
5'-3' exoribonuclease 1.
    
 0.990
ENSGMOP00000011788
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.988
ENSGMOP00000021970
Decapping mRNA 2.
    
 0.984
ENSGMOP00000010840
annotation not available
   
 0.983
ENSGMOP00000006165
PAT1 homolog 2.
    
 0.980
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.