LOC115556190 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115556190

Insulin-like growth factor-binding protein 1. (260 aa)

Predicted Functional Partners:

LOC115550672

0.864

ENSGMOP00000001209

0.742

ENSGMOP00000016070

0.687

ENSGMOP00000013854

0.584

ENSGMOP00000011333

0.565

ENSGMOP00000011882

0.553

ENSGMOP00000021210

0.545

ENSGMOP00000009254

0.478

ENSGMOP00000002128

0.401

ENSGMOP00000005959

0.401

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGMOP00000001209	ENSGMOP00000009254	ENSGMOP00000001209	ENSGMOP00000009254	Insulin-like growth factor 1.	Preproinsulin.	0.906
ENSGMOP00000001209	LOC115556190	ENSGMOP00000001209	ENSGMOP00000017993	Insulin-like growth factor 1.	Insulin-like growth factor-binding protein 1.	0.742
ENSGMOP00000002128	LOC115556190	ENSGMOP00000002128	ENSGMOP00000017993	annotation not available	Insulin-like growth factor-binding protein 1.	0.401
ENSGMOP00000005959	ENSGMOP00000011333	ENSGMOP00000005959	ENSGMOP00000011333	Matrix metallopeptidase 24.	Matrix metallopeptidase 15b.	0.536
ENSGMOP00000005959	ENSGMOP00000016070	ENSGMOP00000005959	ENSGMOP00000016070	Matrix metallopeptidase 24.	Matrix metallopeptidase 14b (membrane-inserted).	0.538
ENSGMOP00000005959	LOC115556190	ENSGMOP00000005959	ENSGMOP00000017993	Matrix metallopeptidase 24.	Insulin-like growth factor-binding protein 1.	0.401
ENSGMOP00000009254	ENSGMOP00000001209	ENSGMOP00000009254	ENSGMOP00000001209	Preproinsulin.	Insulin-like growth factor 1.	0.906
ENSGMOP00000009254	ENSGMOP00000021210	ENSGMOP00000009254	ENSGMOP00000021210	Preproinsulin.	Insulin-like growth factor binding protein, acid labile subunit.	0.409
ENSGMOP00000009254	LOC115550672	ENSGMOP00000009254	ENSGMOP00000019233	Preproinsulin.	Insulin-like growth factor II.	0.886
ENSGMOP00000009254	LOC115556190	ENSGMOP00000009254	ENSGMOP00000017993	Preproinsulin.	Insulin-like growth factor-binding protein 1.	0.478
ENSGMOP00000011333	ENSGMOP00000005959	ENSGMOP00000011333	ENSGMOP00000005959	Matrix metallopeptidase 15b.	Matrix metallopeptidase 24.	0.536
ENSGMOP00000011333	LOC115556190	ENSGMOP00000011333	ENSGMOP00000017993	Matrix metallopeptidase 15b.	Insulin-like growth factor-binding protein 1.	0.565
ENSGMOP00000011882	ENSGMOP00000016070	ENSGMOP00000011882	ENSGMOP00000016070	Myristoylated alanine-rich protein kinase C substrate b.	Matrix metallopeptidase 14b (membrane-inserted).	0.499
ENSGMOP00000011882	LOC115556190	ENSGMOP00000011882	ENSGMOP00000017993	Myristoylated alanine-rich protein kinase C substrate b.	Insulin-like growth factor-binding protein 1.	0.553
ENSGMOP00000013854	LOC115550672	ENSGMOP00000013854	ENSGMOP00000019233	annotation not available	Insulin-like growth factor II.	0.917
ENSGMOP00000013854	LOC115556190	ENSGMOP00000013854	ENSGMOP00000017993	annotation not available	Insulin-like growth factor-binding protein 1.	0.584
ENSGMOP00000016070	ENSGMOP00000005959	ENSGMOP00000016070	ENSGMOP00000005959	Matrix metallopeptidase 14b (membrane-inserted).	Matrix metallopeptidase 24.	0.538
ENSGMOP00000016070	ENSGMOP00000011882	ENSGMOP00000016070	ENSGMOP00000011882	Matrix metallopeptidase 14b (membrane-inserted).	Myristoylated alanine-rich protein kinase C substrate b.	0.499
ENSGMOP00000016070	LOC115556190	ENSGMOP00000016070	ENSGMOP00000017993	Matrix metallopeptidase 14b (membrane-inserted).	Insulin-like growth factor-binding protein 1.	0.687
ENSGMOP00000021210	ENSGMOP00000009254	ENSGMOP00000021210	ENSGMOP00000009254	Insulin-like growth factor binding protein, acid labile subunit.	Preproinsulin.	0.409