ENSGMOP00000018384 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGMOP00000018384

Small nuclear RNA activating complex, polypeptide 3. (371 aa)

Predicted Functional Partners:

ENSGMOP00000005528

0.998

ENSGMOP00000004259

0.980

ENSGMOP00000021946

0.980

ENSGMOP00000019809

0.968

ENSGMOP00000008946

0.955

gtf2b

0.943

ENSGMOP00000017024

0.938

ENSGMOP00000005173

0.896

ENSGMOP00000013314

0.896

ENSGMOP00000016164

0.892

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGMOP00000004259	ENSGMOP00000005173	ENSGMOP00000004259	ENSGMOP00000005173	annotation not available	TATA box binding protein like 2.	0.874
ENSGMOP00000004259	ENSGMOP00000005528	ENSGMOP00000004259	ENSGMOP00000005528	annotation not available	annotation not available	0.980
ENSGMOP00000004259	ENSGMOP00000008946	ENSGMOP00000004259	ENSGMOP00000008946	annotation not available	Small nuclear RNA activating complex, polypeptide 5.	0.978
ENSGMOP00000004259	ENSGMOP00000013314	ENSGMOP00000004259	ENSGMOP00000013314	annotation not available	TATA box binding protein.	0.874
ENSGMOP00000004259	ENSGMOP00000017024	ENSGMOP00000004259	ENSGMOP00000017024	annotation not available	General transcription factor IIA, 1.	0.855
ENSGMOP00000004259	ENSGMOP00000018384	ENSGMOP00000004259	ENSGMOP00000018384	annotation not available	Small nuclear RNA activating complex, polypeptide 3.	0.980
ENSGMOP00000004259	ENSGMOP00000019809	ENSGMOP00000004259	ENSGMOP00000019809	annotation not available	General transcription factor IIA, 2.	0.857
ENSGMOP00000004259	gtf2b	ENSGMOP00000004259	ENSGMOP00000018848	annotation not available	General transcription factor IIB.	0.933
ENSGMOP00000005173	ENSGMOP00000004259	ENSGMOP00000005173	ENSGMOP00000004259	TATA box binding protein like 2.	annotation not available	0.874
ENSGMOP00000005173	ENSGMOP00000005528	ENSGMOP00000005173	ENSGMOP00000005528	TATA box binding protein like 2.	annotation not available	0.888
ENSGMOP00000005173	ENSGMOP00000008946	ENSGMOP00000005173	ENSGMOP00000008946	TATA box binding protein like 2.	Small nuclear RNA activating complex, polypeptide 5.	0.851
ENSGMOP00000005173	ENSGMOP00000013314	ENSGMOP00000005173	ENSGMOP00000013314	TATA box binding protein like 2.	TATA box binding protein.	0.845
ENSGMOP00000005173	ENSGMOP00000016164	ENSGMOP00000005173	ENSGMOP00000016164	TATA box binding protein like 2.	General transcription factor IIF, polypeptide 1.	0.958
ENSGMOP00000005173	ENSGMOP00000017024	ENSGMOP00000005173	ENSGMOP00000017024	TATA box binding protein like 2.	General transcription factor IIA, 1.	0.980
ENSGMOP00000005173	ENSGMOP00000018384	ENSGMOP00000005173	ENSGMOP00000018384	TATA box binding protein like 2.	Small nuclear RNA activating complex, polypeptide 3.	0.896
ENSGMOP00000005173	ENSGMOP00000019809	ENSGMOP00000005173	ENSGMOP00000019809	TATA box binding protein like 2.	General transcription factor IIA, 2.	0.977
ENSGMOP00000005173	ENSGMOP00000021946	ENSGMOP00000005173	ENSGMOP00000021946	TATA box binding protein like 2.	annotation not available	0.877
ENSGMOP00000005173	gtf2b	ENSGMOP00000005173	ENSGMOP00000018848	TATA box binding protein like 2.	General transcription factor IIB.	0.991
ENSGMOP00000005528	ENSGMOP00000004259	ENSGMOP00000005528	ENSGMOP00000004259	annotation not available	annotation not available	0.980
ENSGMOP00000005528	ENSGMOP00000005173	ENSGMOP00000005528	ENSGMOP00000005173	annotation not available	TATA box binding protein like 2.	0.888