STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000018980Nephronectin a. (566 aa)    
Predicted Functional Partners:
ENSGMOP00000014489
Integrin, alpha 8.
    
 0.892
ENSGMOP00000006580
Fraser extracellular matrix complex subunit 1.
   
 0.891
ENSGMOP00000000977
Fras1 related extracellular matrix 1a.
    
 0.869
ENSGMOP00000018834
Fras1 related extracellular matrix 1b.
    
 0.869
ENSGMOP00000001688
FRAS1 related extracellular matrix 2b.
    
  0.863
ENSGMOP00000002985
Integrin, beta 1a.
    
  0.857
ENSGMOP00000017523
Integrin, beta 1b.
    
  0.857
ENSGMOP00000008040
Fras1 related extracellular matrix 3.
    
  0.855
ENSGMOP00000008662
FRAS1 related extracellular matrix 2a.
    
  0.809
ENSGMOP00000005232
annotation not available
    
 0.748
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.