STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000019420Sorting nexin 20. (271 aa)    
Predicted Functional Partners:
ykt6
YKT6 v-SNARE homolog.
     
 0.508
ENSGMOP00000011534
Sorting nexin 12.
     
 0.499
snx3
Sorting nexin 3.
     
 0.499
ENSGMOP00000003271
Sorting nexin 11.
     
 0.477
ENSGMOP00000020297
Hdc homolog, cell cycle regulator.
   
  
 0.472
ENSGMOP00000009275
Sorting nexin 10b.
     
 0.464
ENSGMOP00000014240
Sorting nexin 10a.
     
 0.464
ENSGMOP00000014976
annotation not available
    
 0.460
ENSGMOP00000020182
Syntaxin 8.
    
 0.460
ENSGMOP00000020972
Syntaxin 10.
    
 0.460
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.