STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000019561OTU deubiquitinase 1. (213 aa)    
Predicted Functional Partners:
ENSGMOP00000012733
Ribosomal protein S27a.
    
 0.866
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.831
ENSGMOP00000007083
Zinc finger, AN1-type domain 4.
   
 0.752
ENSGMOP00000019617
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.702
ENSGMOP00000006005
annotation not available
    
 0.693
ENSGMOP00000009338
annotation not available
    
 0.693
ENSGMOP00000012718
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
 0.693
ENSGMOP00000015237
TNF receptor-associated factor 3.
    
 0.635
ENSGMOP00000019487
TNF receptor-associated factor 7.
    
 0.614
ENSGMOP00000015220
TNF receptor-associated factor 6.
    
 0.611
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.