STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000019726HPS1 biogenesis of lysosomal organelles complex 3 subunit 1. (676 aa)    
Predicted Functional Partners:
ENSGMOP00000016297
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
    
 0.988
ENSGMOP00000014798
4-hydroxyphenylpyruvate dioxygenase a.
     
 0.694
ENSGMOP00000017137
4-hydroxyphenylpyruvate dioxygenase b.
     
 0.694
ENSGMOP00000017420
4-hydroxyphenylpyruvate dioxygenase-like.
     
 0.694
RAB38
RAB38, member RAS oncogene family.
     
 0.620
ENSGMOP00000010351
RAB32a, member RAS oncogene family.
     
 0.620
ENSGMOP00000016427
Zgc:162171.
     
 0.620
ENSGMOP00000016906
RAB38b, member of RAS oncogene family.
     
 0.620
RAB29
RAB29, member RAS oncogene family.
     
 0.620
ENSGMOP00000007537
HPS3 biogenesis of lysosomal organelles complex 2 subunit 1.
      
 0.528
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.