ENSGMOP00000020325 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGMOP00000020325

EGF-like repeats and discoidin I-like domains 3a. (411 aa)

Predicted Functional Partners:

ENSGMOP00000013483

0.752

ENSGMOP00000005627

0.732

ENSGMOP00000017533

0.732

ENSGMOP00000009922

0.721

ENSGMOP00000020395

0.710

ENSGMOP00000000712

0.709

ENSGMOP00000002431

0.703

ENSGMOP00000010434

0.703

ENSGMOP00000009131

0.689

ENSGMOP00000015045

0.678

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSGMOP00000000712	ENSGMOP00000002431	Hephaestin-like 1b.	Solute carrier family 40 member 1.	0.739
ENSGMOP00000000712	ENSGMOP00000005627	Hephaestin-like 1b.	annotation not available	0.740
ENSGMOP00000000712	ENSGMOP00000009131	Hephaestin-like 1b.	Cytochrome c-1.	0.689
ENSGMOP00000000712	ENSGMOP00000009922	Hephaestin-like 1b.	Protein S.	0.794
ENSGMOP00000000712	ENSGMOP00000010434	Hephaestin-like 1b.	Si:ch211-254p10.2.	0.739
ENSGMOP00000000712	ENSGMOP00000013483	Hephaestin-like 1b.	Ferrochelatase.	0.891
ENSGMOP00000000712	ENSGMOP00000015045	Hephaestin-like 1b.	Gametogenetin binding protein 2.	0.678
ENSGMOP00000000712	ENSGMOP00000017533	Hephaestin-like 1b.	ATPase copper transporting alpha.	0.740
ENSGMOP00000000712	ENSGMOP00000020325	Hephaestin-like 1b.	EGF-like repeats and discoidin I-like domains 3a.	0.709
ENSGMOP00000000712	ENSGMOP00000020395	Hephaestin-like 1b.	Aminoadipate-semialdehyde dehydrogenase.	0.710
ENSGMOP00000002431	ENSGMOP00000000712	Solute carrier family 40 member 1.	Hephaestin-like 1b.	0.739
ENSGMOP00000002431	ENSGMOP00000010434	Solute carrier family 40 member 1.	Si:ch211-254p10.2.	0.846
ENSGMOP00000002431	ENSGMOP00000020325	Solute carrier family 40 member 1.	EGF-like repeats and discoidin I-like domains 3a.	0.703
ENSGMOP00000005627	ENSGMOP00000000712	annotation not available	Hephaestin-like 1b.	0.740
ENSGMOP00000005627	ENSGMOP00000020325	annotation not available	EGF-like repeats and discoidin I-like domains 3a.	0.732
ENSGMOP00000009131	ENSGMOP00000000712	Cytochrome c-1.	Hephaestin-like 1b.	0.689
ENSGMOP00000009131	ENSGMOP00000013483	Cytochrome c-1.	Ferrochelatase.	0.485
ENSGMOP00000009131	ENSGMOP00000020325	Cytochrome c-1.	EGF-like repeats and discoidin I-like domains 3a.	0.689
ENSGMOP00000009922	ENSGMOP00000000712	Protein S.	Hephaestin-like 1b.	0.794
ENSGMOP00000009922	ENSGMOP00000020325	Protein S.	EGF-like repeats and discoidin I-like domains 3a.	0.721