STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000020369Apobec1 complementation factor. (587 aa)    
Predicted Functional Partners:
ENSGMOP00000012718
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
   0.816
ENSGMOP00000010902
Heterogeneous nuclear ribonucleoprotein K.
   
 0.753
ENSGMOP00000015420
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.753
ENSGMOP00000007250
Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2b.
     
 0.696
ENSGMOP00000007472
annotation not available
     
 0.696
ENSGMOP00000020046
Nuclear cap binding protein subunit 2.
    
 0.690
ENSGMOP00000013128
EWS RNA-binding protein 1b.
   
  0.682
ENSGMOP00000018304
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
  0.682
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.679
ENSGMOP00000001887
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.668
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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