STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000020642Zinc finger, C2HC-type containing 1A. (299 aa)    
Predicted Functional Partners:
ENSGMOP00000020100
Methyltransferase like 25.
    
 
 0.719
ENSGMOP00000015046
RUN and FYVE domain containing 3.
      
 0.528
ENSGMOP00000006938
Missing oocyte, meiosis regulator, homolog (Drosophila).
      
 0.516
parp16
poly(ADP-ribose) polymerase family member 16.
    
 
 0.507
ENSGMOP00000001100
Family with sequence similarity 163 member B, genome duplicate a.
      
 0.493
ENSGMOP00000011384
WD repeat domain 59.
      
 0.493
ENSGMOP00000017403
Zinc finger DHHC-type containing 22.
      
 0.487
CASTOR1
Cytosolic arginine sensor for mTORC1 subunit 1.
      
 0.457
ENSGMOP00000018095
WD repeat domain 24.
      
 0.424
ENSGMOP00000000330
POP4 homolog, ribonuclease P/MRP subunit.
      
 0.420
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.