STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000020980annotation not available (440 aa)    
Predicted Functional Partners:
skp1
S-phase kinase associated protein 1.
    
 0.982
ENSGMOP00000006374
annotation not available
   
 0.740
ENSGMOP00000019476
Cullin 1a.
   
 0.740
ENSGMOP00000002178
Ring-box 1, E3 ubiquitin protein ligase.
    
  0.722
CUL3
Cullin-3-like.
   
 0.670
ENSGMOP00000018480
Cullin 3b.
   
 0.670
ENSGMOP00000004325
NEDD8 ubiquitin like modifier, like.
    
  0.668
ENSGMOP00000001378
Nedd8 activating enzyme E1 subunit 1.
    
  0.661
ENSGMOP00000007930
Ring finger protein 7.
    
  0.649
UBA3
Ubiquitin like modifier activating enzyme 3.
    
  0.645
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.