STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000020997Vacuolar protein sorting 13 homolog C. (3431 aa)    
Predicted Functional Partners:
ENSGMOP00000009187
VPS35 retromer complex component.
   
 
 0.651
ENSGMOP00000017805
Cyclin G associated kinase.
    
 
 0.600
ENSGMOP00000015958
Synaptojanin 1.
    
 
 0.569
ENSGMOP00000006647
CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).
    
   0.565
ENSGMOP00000008961
ATPase cation transporting 13A2.
   
 
 0.563
ENSGMOP00000006215
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.533
ENSGMOP00000020008
VPS39 subunit of HOPS complex.
   
 
 0.518
tmem134
Transmembrane protein 134.
      
 0.461
ENSGMOP00000000253
annotation not available
   
 
 0.438
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.432
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.