STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000021665annotation not available (127 aa)    
Predicted Functional Partners:
ENSGMOP00000013181
Myb-like, SWIRM and MPN domains 1.
    
 0.993
ENSGMOP00000004222
Lysine (K)-specific demethylase 6B, a.
    
 0.814
ENSGMOP00000005013
annotation not available
    
 0.814
ENSGMOP00000007617
Lysine (K)-specific demethylase 6A.
    
 0.814
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.768
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.768
LOC115546069
Histone H2A.V.
  
0.764
H2AZ1
H2A.Z variant histone 1.
  
0.764
ENSGMOP00000005929
PAX interacting (with transcription-activation domain) protein 1.
    
 0.761
ENSGMOP00000012733
Ribosomal protein S27a.
   
  0.758
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.