STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105929002IKAROS family zinc finger 4. (588 aa)    
Predicted Functional Partners:
WDR33
WD repeat domain 33.
    
 0.665
crbn
Cereblon.
    
 
 0.664
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.614
LOC105923020
Si:ch1073-184j22.1.
      
 0.614
LOC105940276
Si:dkey-69o16.5.
      
 0.614
rps26
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
 
  
 0.586
ddb1
Damage-specific DNA binding protein 1.
    
 0.541
dnajc22
DnaJ (Hsp40) homolog, subfamily C, member 22.
    
 
 0.540
lmbr1l
Limb development membrane protein 1-like; Belongs to the LIMR family.
      
 0.536
LOC105922006
Uncharacterized protein.
      
 0.531
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.