STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105921897Saposin B-type domain-containing protein. (130 aa)    
Predicted Functional Partners:
ENSFHEP00000006749
Uncharacterized protein.
   
  
 0.807
PRF1
Perforin 1.
   
  
 0.807
galc
Galactosylceramidase b.
    
 
 0.655
tmem130
Transmembrane protein 130.
    
 0.630
gba
Glucosylceramidase.
    
 0.630
LOC105916071
IL2RB_N1 domain-containing protein.
   
  
 0.603
LOC105931845
CD8 antigen, alpha polypeptide.
   
  
 0.587
npb
Neuropeptide B.
   
 
  0.559
LOC105928876
Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.
   
  
 0.529
ENSFHEP00000029378
NMU domain-containing protein.
     
 0.522
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.