STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105934114Calcium channel, voltage-dependent, gamma subunit 8a. (436 aa)    
Predicted Functional Partners:
LOC105932774
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.957
LOC105916101
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.951
LOC105925621
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.949
LOC105925566
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.946
ppp2r2d
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
  0.934
ENSFHEP00000026894
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
  0.934
LOC105927453
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.925
RASGRP1
RAS guanyl releasing protein 1.
    
  0.925
RASGRP2
RAS guanyl releasing protein 2.
    
  0.925
ppp2r5b
Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit.
    
 0.923
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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