STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAPBVAMP associated protein B and C. (250 aa)    
Predicted Functional Partners:
stard3
StAR-related lipid transfer (START) domain containing 3.
    
 0.953
stard3nl
STARD3 N-terminal like.
    
 0.773
bcap31
B cell receptor associated protein 31.
   
 0.752
bcap29
B-cell receptor-associated protein 29.
   
 0.752
LOC105918651
START domain-containing protein.
    
 0.717
stard5
StAR-related lipid transfer (START) domain containing 5.
    
 0.717
star
Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.
    
 0.717
sec61b
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.685
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.675
ENSFHEP00000013337
t-SNARE coiled-coil homology domain-containing protein.
    
 0.675
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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