STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aldh3b1Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (445 aa)    
Predicted Functional Partners:
LOC105929498
Acetyl-coenzyme A synthetase.
  
 0.971
acss2
Acyl-CoA synthetase short chain family member 2.
  
 0.971
abat
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.970
LOC105932248
Acetyl-coenzyme A synthetase.
  
 0.968
LOC105936216
Zgc:77938.
  
 0.965
upb1
Ureidopropionase, beta.
  
 0.963
LOC105920223
Malate synthase-like.
  
 
 0.962
LOC105930239
Glutamate decarboxylase 1b.
  
 0.961
LOC105939742
PKS_ER domain-containing protein.
  
 0.960
akr1a1
Aldo-keto reductase family 1, member A1b (aldehyde reductase).
  
 0.960
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.