STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chd2Chromodomain helicase DNA binding protein 2. (1741 aa)    
Predicted Functional Partners:
arid4b
Translocase of outer mitochondrial membrane 20.
   
 0.786
arid4a
AT rich interactive domain 4A (RBP1-like).
   
 0.786
actr5
Actin-related protein 5; Belongs to the actin family.
    
 0.720
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.717
ino80c
INO80 complex subunit C.
    
 0.703
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 
 0.687
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.684
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.682
ENSFHEP00000005309
Uncharacterized protein.
    
 0.677
ENSFHEP00000005371
Uncharacterized protein.
    
 0.677
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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