STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105919644Family with sequence similarity 174, member B. (162 aa)    
Predicted Functional Partners:
LOC105933933
LysM, putative peptidoglycan-binding, domain containing 4.
      
 0.637
nudt8
Nudix (nucleoside diphosphate linked moiety X)-type motif 8.
      
 0.528
pdxp
Pyridoxal (pyridoxine, vitamin B6) phosphatase; Belongs to the HAD-like hydrolase superfamily.
      
 0.511
xxylt1
Xyloside xylosyltransferase 1.
      
 0.491
ENSFHEP00000034492
TBC1 domain family, member 16.
      
 0.476
LOC105923375
Family with sequence similarity 124B.
      
 0.432
nup50
Nucleoporin 50.
      
 0.432
mfsd12
Major facilitator superfamily domain containing 12a.
      
 0.420
mad1l1
Mitotic arrest deficient 1 like 1.
      
 0.418
ENSFHEP00000016693
LysM, putative peptidoglycan-binding, domain containing 3.
      
 0.418
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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