STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105915606Zinc finger, FYVE domain containing 16. (1413 aa)    
Predicted Functional Partners:
LOC105936361
Mothers against decapentaplegic homolog.
    
 0.975
LOC105927928
Mothers against decapentaplegic homolog.
    
 0.975
LOC105938719
Mothers against decapentaplegic homolog.
    
 0.971
smad2
Mothers against decapentaplegic homolog.
    
 0.949
ENSFHEP00000024203
MH1 domain-containing protein.
    
 0.949
zfyve9
Zinc finger, FYVE domain containing 9a.
  
  
 
0.948
LOC105920529
Mothers against decapentaplegic homolog.
    
 0.741
ptpn23
Protein tyrosine phosphatase, non-receptor type 23, a.
   
 
 0.741
LOC105930774
Mothers against decapentaplegic homolog.
    
 0.741
ENSFHEP00000034755
MH1 domain-containing protein.
    
 0.741
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.