STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scaperS-phase cyclin A-associated protein in the ER. (1463 aa)    
Predicted Functional Partners:
iars2
Isoleucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.637
dnmbp
Dynamin binding protein.
      
 0.637
trim44
Tripartite motif containing 44.
      
 0.637
poc5
POC5 centriolar protein homolog (Chlamydomonas).
      
 0.636
iars1
Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.636
rcn2
Reticulocalbin-2.
      
 0.575
nbas
Neuroblastoma amplified sequence.
      
 0.533
ccna1
Cyclin A1; Belongs to the cyclin family.
    
 
 0.530
ccna2
Cyclin A2; Belongs to the cyclin family.
    
 
 0.530
pyroxd2
Pyridine nucleotide-disulphide oxidoreductase domain 2.
      
 0.515
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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