mrps35 protein (Fundulus heteroclitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mrps35

Mitochondrial ribosomal protein S35. (343 aa)

Predicted Functional Partners:

mrps10

0.999

mrps11

0.999

ENSFHEP00000004492

0.999

ptcd3

0.999

mrps22

0.999

mrps16

0.999

mrps15

0.999

mrps5

0.999

mrps9

0.999

dap3

0.999

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000004492	dap3	ENSFHEP00000004492	ENSFHEP00000033980	Mitochondrial ribosomal protein S6.	Death associated protein 3.	0.999
ENSFHEP00000004492	mrps10	ENSFHEP00000004492	ENSFHEP00000000145	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S10.	0.999
ENSFHEP00000004492	mrps11	ENSFHEP00000004492	ENSFHEP00000000592	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.999
ENSFHEP00000004492	mrps15	ENSFHEP00000004492	ENSFHEP00000021336	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.999
ENSFHEP00000004492	mrps16	ENSFHEP00000004492	ENSFHEP00000020695	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S16.	0.999
ENSFHEP00000004492	mrps22	ENSFHEP00000004492	ENSFHEP00000018681	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S22.	0.997
ENSFHEP00000004492	mrps35	ENSFHEP00000004492	ENSFHEP00000001717	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S35.	0.999
ENSFHEP00000004492	mrps5	ENSFHEP00000004492	ENSFHEP00000025315	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S5.	0.999
ENSFHEP00000004492	mrps9	ENSFHEP00000004492	ENSFHEP00000026155	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
ENSFHEP00000004492	ptcd3	ENSFHEP00000004492	ENSFHEP00000004976	Mitochondrial ribosomal protein S6.	Pentatricopeptide repeat domain 3.	0.997
dap3	ENSFHEP00000004492	ENSFHEP00000033980	ENSFHEP00000004492	Death associated protein 3.	Mitochondrial ribosomal protein S6.	0.999
dap3	mrps10	ENSFHEP00000033980	ENSFHEP00000000145	Death associated protein 3.	Mitochondrial ribosomal protein S10.	0.999
dap3	mrps11	ENSFHEP00000033980	ENSFHEP00000000592	Death associated protein 3.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.999
dap3	mrps15	ENSFHEP00000033980	ENSFHEP00000021336	Death associated protein 3.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.999
dap3	mrps16	ENSFHEP00000033980	ENSFHEP00000020695	Death associated protein 3.	Mitochondrial ribosomal protein S16.	0.999
dap3	mrps22	ENSFHEP00000033980	ENSFHEP00000018681	Death associated protein 3.	Mitochondrial ribosomal protein S22.	0.999
dap3	mrps35	ENSFHEP00000033980	ENSFHEP00000001717	Death associated protein 3.	Mitochondrial ribosomal protein S35.	0.999
dap3	mrps5	ENSFHEP00000033980	ENSFHEP00000025315	Death associated protein 3.	Mitochondrial ribosomal protein S5.	0.999
dap3	mrps9	ENSFHEP00000033980	ENSFHEP00000026155	Death associated protein 3.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
dap3	ptcd3	ENSFHEP00000033980	ENSFHEP00000004976	Death associated protein 3.	Pentatricopeptide repeat domain 3.	0.998