STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105923369Protein yippee-like; Belongs to the yippee family. (119 aa)    
Predicted Functional Partners:
wdr26
WD repeat domain 26b.
   
 
 0.744
rmnd5b
Required for meiotic nuclear division 5 homolog B.
    
 
 0.694
armc8
Armadillo repeat containing 8.
    
 0.647
ranbp9
RAN binding protein 9.
   
 
 0.625
ranbp10
RAN binding protein 10.
   
 
 0.625
SPRYD3
SPRY domain containing 3.
   
 
 0.528
LOC105930899
SPRY domain containing 3.
   
 
 0.528
GID8
Glucose-induced degradation protein 8.
    
 
 0.516
LOC105926134
GID complex subunit 8 homolog b (S. cerevisiae).
    
 
 0.516
fbxl20
F-box and leucine-rich repeat protein 20.
   
 
 0.451
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.