STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105933007Parvalbumin 1; Belongs to the parvalbumin family. (108 aa)    
Predicted Functional Partners:
CASK
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.760
LOC105921523
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.760
myo3a
Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.699
LOC105920783
Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.699
ENSFHEP00000024724
Protein kinase domain-containing protein.
   
 0.699
dclk1
Doublecortin-like kinase 1a.
   
 0.632
LOC105937985
Doublecortin-like kinase 1b.
   
 0.632
wdr90
WD repeat domain 90.
   
 
 0.628
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.586
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12; Belongs to the Nudix hydrolase family.
    
  0.560
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.