STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdk13Cyclin-dependent kinase 13. (1445 aa)    
Predicted Functional Partners:
ccnk
Cyclin K; Belongs to the cyclin family.
    
 0.988
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.977
supt5h
Transcription elongation factor SPT5.
    
 0.964
ENSFHEP00000022779
Uncharacterized protein.
    
 0.908
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.884
ccnt1
Cyclin-T1; Belongs to the cyclin family.
   
 0.876
ccnt2
Cyclin-T2; Belongs to the cyclin family.
   
 0.876
LOC105932535
Cyclin T2b; Belongs to the cyclin family.
   
 0.876
ccnq
Cyclin-related protein FAM58A; Belongs to the cyclin family.
    
 0.870
supt4h1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.859
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.