STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wacWW domain containing adaptor with coiled-coil a. (541 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.981
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.936
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
    
 
 0.935
sf3b2
Splicing factor 3b, subunit 2.
   
 
 0.879
LOC105930709
RNA binding motif protein 25b.
   
 
 0.876
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
   0.876
sf3b3
Splicing factor 3b, subunit 3.
    
 
 0.876
LOC105932960
RNA binding motif protein 25a.
   
 
 0.876
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 
 0.862
ddx46
ATP-dependent RNA helicase DDX46, putative.
   
 
 0.854
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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