STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eri1Exoribonuclease 1. (350 aa)    
Predicted Functional Partners:
LOC105920123
Stem-loop binding protein.
   
 
 0.913
ENSFHEP00000015352
SLBP_RNA_bind domain-containing protein.
   
 
 0.912
dicer1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
    
 
 0.787
exosc5
Exosome component 5.
   
 0.768
LOC105935244
Zgc:56699.
    
 
 0.699
RPL30
Ribosomal protein L30.
     
 0.685
rpl38
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
     
 0.681
drosha
Drosha ribonuclease III.
   
 
 0.672
rpl4
Ribosomal protein L4.
    
 0.639
ankle1
Zgc:85936.
      
 0.637
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.