STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105932309AXH domain-containing protein. (679 aa)    
Predicted Functional Partners:
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.958
LOC105921686
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.957
LOC105919693
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.953
cic
Capicua transcriptional repressor b.
    
 
 0.895
atxn1l
Ataxin-1-like protein.
    
0.786
pum2
Pumilio RNA-binding family member 2.
     
 0.599
ENSFHEP00000035095
PUM-HD domain-containing protein.
     
 0.599
bbx
BBX high mobility group box domain containing.
    
 
 0.579
ist1
IST1 factor associated with ESCRT-III.
    
 0.578
kat7
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.526
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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