STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105938124Uncharacterized protein. (870 aa)    
Predicted Functional Partners:
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
    
 0.978
eaf1
ELL-associated factor 1.
    
 0.946
mllt1
MLLT1 super elongation complex subunit a.
    
 0.906
ENSFHEP00000022379
MLLT3 super elongation complex subunit.
    
 0.906
ccnt1
Cyclin-T1; Belongs to the cyclin family.
   
 0.877
ccnt2
Cyclin-T2; Belongs to the cyclin family.
   
 0.877
LOC105932535
Cyclin T2b; Belongs to the cyclin family.
   
 0.877
ell2
Elongation factor, RNA polymerase II, 2.
   
 0.842
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.838
LOC105919699
Si:ch211-13k12.2.
   
 0.838
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.