STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSFHEP00000003141Uncharacterized protein. (58 aa)    
Predicted Functional Partners:
bud13
BUD13 homolog.
   
 0.998
SNIP1
Smad nuclear interacting protein 1.
   
 0.998
phf5a
PHD finger protein 5A.
    
 
 0.996
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.995
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.994
sf3b3
Splicing factor 3b, subunit 3.
    
 
 0.994
sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.994
lix1l
Splicing factor 3b, subunit 4.
    
 
 0.993
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.992
prpf19
Pre-mRNA-processing factor 19.
    
   0.990
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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