STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105937240Uncharacterized protein. (690 aa)    
Predicted Functional Partners:
ENSFHEP00000023256
Uncharacterized protein.
 
     0.943
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.556
zdhhc24
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
 
 0.517
ENSFHEP00000000334
Uncharacterized protein.
    
  0.511
LOC105922837
BRCT domain-containing protein.
    
  0.479
exoc2
Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
    
 
 0.468
asxl2
ASXL transcriptional regulator 2.
     
 0.457
YTHDC2
YTH domain containing 2.
    
  0.441
pgk1
Phosphoglycerate kinase.
    
 
 0.438
ENSFHEP00000012299
3'-5' exonuclease domain-containing protein.
      
 0.436
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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