STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknox2Pbx/knotted 1 homeobox 2. (485 aa)    
Predicted Functional Partners:
LOC105936055
Pre-B-cell leukemia homeobox 2.
    
0.724
pbx3
Pre-B-cell leukemia transcription factor 3.
    
0.724
LOC105916687
Pre-B-cell leukemia homeobox 1a.
    
0.724
LOC105915943
Pre-B-cell leukemia transcription factor 3.
    
0.724
LOC105932039
Pre-B-cell leukemia transcription factor 4.
    
0.724
zfpm1
Zinc finger protein, FOG family member 1.
    
 
 0.658
znf217
Zinc finger protein 217.
    
 
 0.658
ssr3
Signal sequence receptor, gamma.
   
  
 0.653
hoxb1
Homeobox protein Hox-B1b.
    
 0.644
LOC105919930
Homeobox B1a.
    
 0.644
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.