ENSFHEP00000003495 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSFHEP00000003495

Reverse transcriptase domain-containing protein. (441 aa)

Predicted Functional Partners:

mrpl16

0.946

mrpl2

0.802

COX2

0.759

ATP6

0.713

mrps12

0.702

COX1

0.695

COX3

0.689

ENSFHEP00000016354

0.686

rpl10

0.682

mrpl20

0.679

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6	COX1	ENSFHEP00000000007	ENSFHEP00000000004	ATP synthase subunit a.	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	0.988
ATP6	COX2	ENSFHEP00000000007	ENSFHEP00000000005	ATP synthase subunit a.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.999
ATP6	COX3	ENSFHEP00000000007	ENSFHEP00000000008	ATP synthase subunit a.	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	0.999
ATP6	ENSFHEP00000003495	ENSFHEP00000000007	ENSFHEP00000003495	ATP synthase subunit a.	Reverse transcriptase domain-containing protein.	0.713
ATP6	ENSFHEP00000016354	ENSFHEP00000000007	ENSFHEP00000016354	ATP synthase subunit a.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.943
ATP6	mrpl16	ENSFHEP00000000007	ENSFHEP00000013841	ATP synthase subunit a.	Mitochondrial ribosomal protein L16.	0.880
ATP6	mrpl2	ENSFHEP00000000007	ENSFHEP00000001280	ATP synthase subunit a.	Mitochondrial ribosomal protein L2.	0.920
ATP6	mrpl20	ENSFHEP00000000007	ENSFHEP00000023635	ATP synthase subunit a.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.637
ATP6	mrps12	ENSFHEP00000000007	ENSFHEP00000023517	ATP synthase subunit a.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.940
ATP6	rpl10	ENSFHEP00000000007	ENSFHEP00000010108	ATP synthase subunit a.	Ribosomal protein L10.	0.807
COX1	ATP6	ENSFHEP00000000004	ENSFHEP00000000007	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	ATP synthase subunit a.	0.988
COX1	COX2	ENSFHEP00000000004	ENSFHEP00000000005	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.999
COX1	COX3	ENSFHEP00000000004	ENSFHEP00000000008	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	0.999
COX1	ENSFHEP00000003495	ENSFHEP00000000004	ENSFHEP00000003495	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	Reverse transcriptase domain-containing protein.	0.695
COX1	mrpl16	ENSFHEP00000000004	ENSFHEP00000013841	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	Mitochondrial ribosomal protein L16.	0.625
COX1	mrpl2	ENSFHEP00000000004	ENSFHEP00000001280	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	Mitochondrial ribosomal protein L2.	0.571
COX1	mrps12	ENSFHEP00000000004	ENSFHEP00000023517	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.630
COX1	rpl10	ENSFHEP00000000004	ENSFHEP00000010108	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	Ribosomal protein L10.	0.439
COX2	ATP6	ENSFHEP00000000005	ENSFHEP00000000007	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	ATP synthase subunit a.	0.999
COX2	COX1	ENSFHEP00000000005	ENSFHEP00000000004	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	0.999