STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc84Coiled-coil domain containing 84. (358 aa)    
Predicted Functional Partners:
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
    
   0.618
txnl4b
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
   0.615
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
    
   0.615
mrgbp
MRG/MORF4L-binding protein.
   
  
 0.523
tmem208
Transmembrane protein 208.
      
 0.512
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 
 0.512
ENSFHEP00000020657
Si:dkey-161j23.7.
      
 0.437
LOC105940312
tRNA selenocysteine 1 associated protein 1b.
      
 0.426
trnau1ap
tRNA selenocysteine 1 associated protein 1a.
      
 0.426
ints4
Integrator complex subunit 4.
      
 0.422
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.