STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
faf1Fas (TNFRSF6) associated factor 1. (674 aa)    
Predicted Functional Partners:
ubxn1
UBX domain protein 1.
   
 0.993
ubxn6
UBX domain protein 6.
    
 0.988
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 0.985
LOC105940240
Uncharacterized protein.
    
 0.983
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.980
ubxn7
UBX domain protein 7.
    
 
0.980
LOC105929216
Spermatogenesis-associated 5 protein 1-like protein; Belongs to the AAA ATPase family.
   
 0.979
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.979
ENSFHEP00000017084
UBX domain-containing protein.
    
 0.976
ENSFHEP00000032384
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 0.976
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.