STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marchf6Membrane-associated ring finger (C3HC4) 6. (870 aa)    
Predicted Functional Partners:
LOC105936446
E3 ubiquitin-protein ligase MARCH6.
  
  
 
0.933
LOC105930455
NOT2_3_5 domain-containing protein.
    
 
 0.797
LOC105917730
CCR4-NOT transcription complex, subunit 2.
    
 
 0.797
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.784
ropn1l
Rhophilin associated tail protein 1-like.
 
    
 0.748
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
    
 
 0.737
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.729
amfr
Autocrine motility factor receptor b.
    
 
 0.729
c1qtnf12
C1q and TNF related 12.
    
 
 0.716
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.698
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.