ENSFHEP00000003947 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSFHEP00000003947

Uncharacterized protein. (292 aa)

Predicted Functional Partners:

itgb8

0.940

cd44

0.920

itgb3

0.910

itgb5

0.910

LOC105932724

0.909

LOC105930938

0.909

itgb6

0.909

LOC105933956

0.907

itgb1

0.906

ENSFHEP00000034084

0.905

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000003947	ENSFHEP00000034084	ENSFHEP00000003947	ENSFHEP00000034084	Uncharacterized protein.	Integrin, alpha 10.	0.905
ENSFHEP00000003947	LOC105930938	ENSFHEP00000003947	ENSFHEP00000012839	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.909
ENSFHEP00000003947	LOC105932724	ENSFHEP00000003947	ENSFHEP00000011607	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.909
ENSFHEP00000003947	LOC105933956	ENSFHEP00000003947	ENSFHEP00000030938	Uncharacterized protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.907
ENSFHEP00000003947	cd44	ENSFHEP00000003947	ENSFHEP00000008616	Uncharacterized protein.	Link domain-containing protein.	0.920
ENSFHEP00000003947	itgb1	ENSFHEP00000003947	ENSFHEP00000017560	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.906
ENSFHEP00000003947	itgb3	ENSFHEP00000003947	ENSFHEP00000008320	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.910
ENSFHEP00000003947	itgb5	ENSFHEP00000003947	ENSFHEP00000012007	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.910
ENSFHEP00000003947	itgb6	ENSFHEP00000003947	ENSFHEP00000024195	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.909
ENSFHEP00000003947	itgb8	ENSFHEP00000003947	ENSFHEP00000028939	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.940
ENSFHEP00000034084	ENSFHEP00000003947	ENSFHEP00000034084	ENSFHEP00000003947	Integrin, alpha 10.	Uncharacterized protein.	0.905
ENSFHEP00000034084	LOC105930938	ENSFHEP00000034084	ENSFHEP00000012839	Integrin, alpha 10.	Integrin beta; Belongs to the integrin beta chain family.	0.975
ENSFHEP00000034084	LOC105932724	ENSFHEP00000034084	ENSFHEP00000011607	Integrin, alpha 10.	Integrin beta; Belongs to the integrin beta chain family.	0.880
ENSFHEP00000034084	LOC105933956	ENSFHEP00000034084	ENSFHEP00000030938	Integrin, alpha 10.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.632
ENSFHEP00000034084	itgb1	ENSFHEP00000034084	ENSFHEP00000017560	Integrin, alpha 10.	Integrin beta; Belongs to the integrin beta chain family.	0.969
ENSFHEP00000034084	itgb3	ENSFHEP00000034084	ENSFHEP00000008320	Integrin, alpha 10.	Integrin beta; Belongs to the integrin beta chain family.	0.937
ENSFHEP00000034084	itgb5	ENSFHEP00000034084	ENSFHEP00000012007	Integrin, alpha 10.	Integrin beta; Belongs to the integrin beta chain family.	0.937
ENSFHEP00000034084	itgb6	ENSFHEP00000034084	ENSFHEP00000024195	Integrin, alpha 10.	Integrin beta; Belongs to the integrin beta chain family.	0.934
ENSFHEP00000034084	itgb8	ENSFHEP00000034084	ENSFHEP00000028939	Integrin, alpha 10.	Integrin beta; Belongs to the integrin beta chain family.	0.832
LOC105930938	ENSFHEP00000003947	ENSFHEP00000012839	ENSFHEP00000003947	Integrin beta; Belongs to the integrin beta chain family.	Uncharacterized protein.	0.909