STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105933496Uncharacterized protein. (393 aa)    
Predicted Functional Partners:
mcidas
Uncharacterized protein.
      
 0.512
arhgef1
Rho guanine nucleotide exchange factor (GEF) 1b.
  
     0.436
c2cd2
C2 calcium dependent domain containing 2.
      
 0.433
meox1
Homeobox protein MOX-1.
      
 0.431
foxn4
Forkhead box N4.
      
 0.418
ENSFHEP00000013831
Uncharacterized protein.
      
 0.416
PRDM6
PR/SET domain 6.
      
 0.416
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.