STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105924021G_PROTEIN_RECEP_F3_4 domain-containing protein. (802 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
   0.607
ENSFHEP00000001312
Ig-like domain-containing protein.
    
  0.474
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.474
LOC105921955
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
    
 0.470
efhb
Uncharacterized protein.
    
   0.443
LOC105925463
Homer scaffold protein 1b.
    
  0.442
LOC105933891
WH1 domain-containing protein.
    
  0.442
efhc1
EF-hand domain (C-terminal) containing 1.
    
   0.437
ripk4
Receptor-interacting serine-threonine kinase 4.
    
  0.432
ENSFHEP00000013903
PARK2 co-regulated.
    
 
 0.424
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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