STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSFHEP00000005340Torsin family 1. (152 aa)    
Predicted Functional Partners:
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
   
  0.719
cops5
COP9 signalosome subunit 5.
     
 0.674
cops2
COP9 signalosome subunit 2.
   
 
  0.673
LOC105927866
Uncharacterized protein.
    
 
 0.666
LOC105927867
Uncharacterized protein.
    
 
 0.666
cops8
COP9 signalosome subunit 8.
   
 
  0.653
COPS6
COP9 signalosome subunit 6.
   
 
  0.645
LOC105937516
Patatin-like phospholipase domain containing 8.
      
 0.511
cnn3
Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.
      
 0.511
LOC105925732
Teleost multiple tissue opsin 3a; Belongs to the G-protein coupled receptor 1 family.
      
 0.511
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.