STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mef2dMyocyte enhancer factor 2d. (583 aa)    
Predicted Functional Partners:
mef2c
Myocyte enhancer factor 2cb.
  
0.847
mef2b
Myocyte enhancer factor 2b.
    
0.843
myog
Myogenin.
    
 0.798
nfatc2
Nuclear factor of activated T cells 2a.
    
 0.778
LOC105934150
MADS-box domain-containing protein.
  
 
0.777
mef2a
Myocyte enhancer factor 2aa.
  
 
0.772
nfatc3
Nuclear factor of activated T cells 3a.
    
 0.754
myf6
Myogenic factor 6.
    
 0.752
nfatc4
Nuclear factor of activated T cells 4.
     
 0.732
LOC105915533
MADS-box domain-containing protein.
  
  
 
0.731
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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