STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tra2bTransformer 2 beta homolog. (285 aa)    
Predicted Functional Partners:
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.941
LOC105933254
RRM domain-containing protein.
   
 0.941
srsf2
Serine and arginine rich splicing factor 2a.
  
0.938
ENSFHEP00000006064
Serine and arginine rich splicing factor 7a.
   
 0.936
srsf7
Serine and arginine rich splicing factor 7b.
   
 0.936
LOC105919822
Uncharacterized protein.
  
0.933
LOC105930811
Serine and arginine rich splicing factor 9.
   
 0.928
LOC105934529
Serine and arginine rich splicing factor 1a.
   
 0.927
ENSFHEP00000029911
RRM domain-containing protein.
   
 0.914
slitrk3
SLIT and NTRK-like family, member 3a.
    
 
 0.870
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.