STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105937995Spartin b. (576 aa)    
Predicted Functional Partners:
spart
Spartin a.
  
  
 
0.949
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.933
LOC105925884
E3 ubiquitin-protein ligase.
    
 
 0.688
ITCH
Itchy E3 ubiquitin protein ligase.
    
 
 0.688
LOC105933647
Thymosin beta 5.
      
 0.637
tor4a
Torsin family 4, member Aa.
      
 0.614
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.613
wwp2
E3 ubiquitin-protein ligase.
    
 
 0.613
snx15
Sorting nexin 15.
      
 0.606
nipa1
NIPA magnesium transporter 1.
   
  
 0.585
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.