STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
odc1Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (459 aa)    
Predicted Functional Partners:
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 0.984
oaz1
Ornithine decarboxylase antizyme 1a.
    
 0.983
oat
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.982
LOC105930787
Ornithine decarboxylase antizyme 1b.
    
 0.977
agmat
Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.
  
 
 0.977
arg2
Arginase.
  
 
 0.969
SAT1
Spermidine/spermine N1-acetyltransferase 1b.
    
 0.969
LOC105919889
Spermidine/spermine N1-acetyltransferase 1.
    
 0.969
LOC105929766
Spermidine/spermine N1-acetyltransferase family member 2a.
    
 0.960
aoc1
Amine oxidase.
   
 
 0.959
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.