STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spata17Spermatogenesis associated 17. (258 aa)    
Predicted Functional Partners:
spaca6
Ig-like domain-containing protein.
      
 0.636
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.618
spata20
Spermatogenesis associated 20.
      
 0.603
LOC105938494
Coiled-coil domain containing 136b.
   
 0.601
spata7
Uncharacterized protein.
      
 0.590
exoc4
Exocyst complex component 4.
    
 0.584
LOC105939793
RAB25, member RAS oncogene family b.
   
 0.567
LOC105939790
RAB11a, member RAS oncogene family, like.
   
 0.567
LOC105930397
RAB25, member RAS oncogene family a.
   
 0.567
rabl2a
RAB, member of RAS oncogene family-like 2.
   
 0.567
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.