LOC105937170 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105937170

Disco-interacting protein 2 homolog A. (1433 aa)

Predicted Functional Partners:

coasy

0.900

hsdl2

0.838

ndufab1

0.806

palb2

0.806

ENSFHEP00000000443

0.791

LOC105928883

0.791

ENSFHEP00000021420

0.791

nup93

0.777

med23

0.732

LOC105936151

0.731

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000000443	LOC105937170	ENSFHEP00000000443	ENSFHEP00000007987	Uncharacterized protein.	Disco-interacting protein 2 homolog A.	0.791
ENSFHEP00000000443	hsdl2	ENSFHEP00000000443	ENSFHEP00000024579	Uncharacterized protein.	Hydroxysteroid dehydrogenase 2-like protein.	0.722
ENSFHEP00000000443	ndufab1	ENSFHEP00000000443	ENSFHEP00000003572	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.984
ENSFHEP00000000443	palb2	ENSFHEP00000000443	ENSFHEP00000003742	Uncharacterized protein.	PALB2_WD40 domain-containing protein.	0.984
ENSFHEP00000021420	LOC105928883	ENSFHEP00000021420	ENSFHEP00000000450	AMP-binding domain-containing protein.	Aminoadipate-semialdehyde dehydrogenase.	0.876
ENSFHEP00000021420	LOC105937170	ENSFHEP00000021420	ENSFHEP00000007987	AMP-binding domain-containing protein.	Disco-interacting protein 2 homolog A.	0.791
ENSFHEP00000021420	hsdl2	ENSFHEP00000021420	ENSFHEP00000024579	AMP-binding domain-containing protein.	Hydroxysteroid dehydrogenase 2-like protein.	0.722
ENSFHEP00000021420	ndufab1	ENSFHEP00000021420	ENSFHEP00000003572	AMP-binding domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.984
ENSFHEP00000021420	palb2	ENSFHEP00000021420	ENSFHEP00000003742	AMP-binding domain-containing protein.	PALB2_WD40 domain-containing protein.	0.984
LOC105928883	ENSFHEP00000021420	ENSFHEP00000000450	ENSFHEP00000021420	Aminoadipate-semialdehyde dehydrogenase.	AMP-binding domain-containing protein.	0.876
LOC105928883	LOC105937170	ENSFHEP00000000450	ENSFHEP00000007987	Aminoadipate-semialdehyde dehydrogenase.	Disco-interacting protein 2 homolog A.	0.791
LOC105928883	hsdl2	ENSFHEP00000000450	ENSFHEP00000024579	Aminoadipate-semialdehyde dehydrogenase.	Hydroxysteroid dehydrogenase 2-like protein.	0.722
LOC105928883	ndufab1	ENSFHEP00000000450	ENSFHEP00000003572	Aminoadipate-semialdehyde dehydrogenase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.984
LOC105928883	palb2	ENSFHEP00000000450	ENSFHEP00000003742	Aminoadipate-semialdehyde dehydrogenase.	PALB2_WD40 domain-containing protein.	0.984
LOC105936151	LOC105937170	ENSFHEP00000008584	ENSFHEP00000007987	RAN binding protein 2.	Disco-interacting protein 2 homolog A.	0.731
LOC105936151	ndufab1	ENSFHEP00000008584	ENSFHEP00000003572	RAN binding protein 2.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.590
LOC105936151	nup93	ENSFHEP00000008584	ENSFHEP00000008159	RAN binding protein 2.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.999
LOC105936151	palb2	ENSFHEP00000008584	ENSFHEP00000003742	RAN binding protein 2.	PALB2_WD40 domain-containing protein.	0.590
LOC105937170	ENSFHEP00000000443	ENSFHEP00000007987	ENSFHEP00000000443	Disco-interacting protein 2 homolog A.	Uncharacterized protein.	0.791
LOC105937170	ENSFHEP00000021420	ENSFHEP00000007987	ENSFHEP00000021420	Disco-interacting protein 2 homolog A.	AMP-binding domain-containing protein.	0.791