LOC105916549 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105916549

Uncharacterized protein. (564 aa)

Predicted Functional Partners:

skap1

0.902

LOC105920702

0.814

ENSFHEP00000007368

0.814

ENSFHEP00000025972

0.814

skap2

0.793

LOC105922259

0.757

c6

0.748

LOC105930938

0.743

itgb1

0.743

itga9

0.722

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000007368	ENSFHEP00000025972	ENSFHEP00000007368	ENSFHEP00000025972	Uncharacterized protein.	Uncharacterized protein.	0.996
ENSFHEP00000007368	LOC105916549	ENSFHEP00000007368	ENSFHEP00000008347	Uncharacterized protein.	Uncharacterized protein.	0.814
ENSFHEP00000007368	LOC105920702	ENSFHEP00000007368	ENSFHEP00000007082	Uncharacterized protein.	Intersectin 2b.	0.986
ENSFHEP00000025972	ENSFHEP00000007368	ENSFHEP00000025972	ENSFHEP00000007368	Uncharacterized protein.	Uncharacterized protein.	0.996
ENSFHEP00000025972	LOC105916549	ENSFHEP00000025972	ENSFHEP00000008347	Uncharacterized protein.	Uncharacterized protein.	0.814
ENSFHEP00000025972	LOC105920702	ENSFHEP00000025972	ENSFHEP00000007082	Uncharacterized protein.	Intersectin 2b.	0.985
LOC105916549	ENSFHEP00000007368	ENSFHEP00000008347	ENSFHEP00000007368	Uncharacterized protein.	Uncharacterized protein.	0.814
LOC105916549	ENSFHEP00000025972	ENSFHEP00000008347	ENSFHEP00000025972	Uncharacterized protein.	Uncharacterized protein.	0.814
LOC105916549	LOC105920702	ENSFHEP00000008347	ENSFHEP00000007082	Uncharacterized protein.	Intersectin 2b.	0.814
LOC105916549	LOC105922259	ENSFHEP00000008347	ENSFHEP00000017468	Uncharacterized protein.	Integrin beta.	0.757
LOC105916549	LOC105930938	ENSFHEP00000008347	ENSFHEP00000012839	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.743
LOC105916549	c6	ENSFHEP00000008347	ENSFHEP00000030053	Uncharacterized protein.	Complement component 6.	0.748
LOC105916549	itga9	ENSFHEP00000008347	ENSFHEP00000024494	Uncharacterized protein.	Integrin, alpha 9; Belongs to the integrin alpha chain family.	0.722
LOC105916549	itgb1	ENSFHEP00000008347	ENSFHEP00000017560	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.743
LOC105916549	skap1	ENSFHEP00000008347	ENSFHEP00000004849	Uncharacterized protein.	Src kinase associated phosphoprotein 1.	0.902
LOC105916549	skap2	ENSFHEP00000008347	ENSFHEP00000030116	Uncharacterized protein.	Src kinase associated phosphoprotein 2.	0.793
LOC105920702	ENSFHEP00000007368	ENSFHEP00000007082	ENSFHEP00000007368	Intersectin 2b.	Uncharacterized protein.	0.986
LOC105920702	ENSFHEP00000025972	ENSFHEP00000007082	ENSFHEP00000025972	Intersectin 2b.	Uncharacterized protein.	0.985
LOC105920702	LOC105916549	ENSFHEP00000007082	ENSFHEP00000008347	Intersectin 2b.	Uncharacterized protein.	0.814
LOC105922259	LOC105916549	ENSFHEP00000017468	ENSFHEP00000008347	Integrin beta.	Uncharacterized protein.	0.757