STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105939537Si:dkey-34d22.5. (223 aa)    
Predicted Functional Partners:
LOC105920702
Intersectin 2b.
    
 0.858
ENSFHEP00000007368
Uncharacterized protein.
    
 0.858
ENSFHEP00000025972
Uncharacterized protein.
    
 0.858
LOC105939779
Flocculation protein FLO11.
    
 0.807
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.807
LOC105939748
Zgc:100846.
    
  0.796
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.794
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.794
LOC105918413
RAB42, member RAS oncogene family a.
  
 
0.768
lmln
Leishmanolysin-like peptidase.
    
 0.767
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.